feat(hex8): connect Solid CLI and atomic HDF5 output
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KOKO\Mimi
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#include "io/hdf5/solid_hdf5_self_check.h"
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#include <cmath>
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#include <type_traits>
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#include "io/hdf5/hdf5_primitives.h"
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namespace fesa::hdf5_internal {
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namespace {
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void Check(bool condition, const char* message) {
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if (!condition) throw Hdf5Failure(message);
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}
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Hdf5Handle Dataset(hid_t file, const std::string& path,
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const std::vector<hsize_t>& dimensions) {
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Hdf5Handle dataset{RequireHdf5Id(H5Dopen2(file, path.c_str(), H5P_DEFAULT),
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"Solid required dataset is missing."),
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H5Dclose};
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Hdf5Handle space{
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RequireHdf5Id(H5Dget_space(dataset.Get()), "Solid dataset space failed."),
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H5Sclose};
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Check(H5Sget_simple_extent_ndims(space.Get()) ==
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static_cast<int>(dimensions.size()),
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"Solid dataset rank mismatch.");
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std::vector<hsize_t> actual(dimensions.size());
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RequireHdf5(H5Sget_simple_extent_dims(space.Get(), actual.data(), nullptr),
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"Solid dimensions read failed.");
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Check(actual == dimensions, "Solid dataset shape mismatch.");
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Hdf5Handle properties{RequireHdf5Id(H5Dget_create_plist(dataset.Get()),
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"Solid dataset properties failed."),
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H5Pclose};
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Check(H5Pget_layout(properties.Get()) == H5D_CONTIGUOUS &&
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H5Pget_nfilters(properties.Get()) == 0,
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"Solid dataset storage mismatch.");
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return dataset;
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}
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void String(hid_t object, const std::string& name,
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const std::string& expected) {
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Hdf5Handle attr{RequireHdf5Id(H5Aopen(object, name.c_str(), H5P_DEFAULT),
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"Solid string attribute missing."),
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H5Aclose};
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Hdf5Handle type{
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RequireHdf5Id(H5Aget_type(attr.Get()), "Solid attribute type failed."),
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H5Tclose};
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Hdf5Handle space{
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RequireHdf5Id(H5Aget_space(attr.Get()), "Solid attribute space failed."),
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H5Sclose};
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Check(H5Tget_class(type.Get()) == H5T_STRING &&
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H5Tis_variable_str(type.Get()) > 0 &&
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H5Tget_cset(type.Get()) == H5T_CSET_UTF8 &&
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H5Sget_simple_extent_type(space.Get()) == H5S_SCALAR,
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"Solid string attribute type mismatch.");
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char* value = nullptr;
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RequireHdf5(H5Aread(attr.Get(), type.Get(), &value),
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"Solid string attribute read failed.");
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const std::string actual = value ? value : "";
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RequireHdf5(H5free_memory(value), "Solid string release failed.");
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Check(IsValidUtf8(actual) && actual == expected,
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"Solid string attribute mismatch.");
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}
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template <class T>
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void Number(hid_t object, const std::string& name, T expected, hid_t ft,
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hid_t mt) {
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Hdf5Handle attr{RequireHdf5Id(H5Aopen(object, name.c_str(), H5P_DEFAULT),
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"Solid numeric attribute missing."),
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H5Aclose};
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Hdf5Handle type{
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RequireHdf5Id(H5Aget_type(attr.Get()), "Solid attribute type failed."),
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H5Tclose};
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Hdf5Handle space{
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RequireHdf5Id(H5Aget_space(attr.Get()), "Solid attribute space failed."),
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H5Sclose};
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Check(H5Tequal(type.Get(), ft) > 0 &&
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H5Sget_simple_extent_type(space.Get()) == H5S_SCALAR,
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"Solid numeric attribute type mismatch.");
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T actual{};
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RequireHdf5(H5Aread(attr.Get(), mt, &actual),
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"Solid numeric attribute read failed.");
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Check(actual == expected, "Solid numeric attribute mismatch.");
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}
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void Column(hid_t dataset, hid_t compound, std::size_t index,
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const SolidColumn& column, std::size_t rows) {
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char* name = H5Tget_member_name(compound, static_cast<unsigned>(index));
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Check(name != nullptr, "Solid member name missing.");
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const std::string actual_name = name;
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RequireHdf5(H5free_memory(name), "Solid member name release failed.");
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Check(actual_name == column.name,
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"Solid compound member order/name mismatch.");
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Hdf5Handle stored{
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RequireHdf5Id(H5Tget_member_type(compound, static_cast<unsigned>(index)),
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"Solid member type missing."),
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H5Tclose};
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const auto expected = SolidColumnType(column, false);
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Check(H5Tequal(stored.Get(), expected.Get()) > 0,
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"Solid compound member type mismatch.");
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const auto native = SolidColumnType(column, true);
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Hdf5Handle memory{
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RequireHdf5Id(H5Tcreate(H5T_COMPOUND, H5Tget_size(native.Get())),
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"Solid column memory type failed."),
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H5Tclose};
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RequireHdf5(H5Tinsert(memory.Get(), column.name.c_str(), 0, native.Get()),
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"Solid column memory member failed.");
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std::visit(
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[&](const auto& values) {
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using T = typename std::decay_t<decltype(values)>::value_type;
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if constexpr (std::is_same_v<T, std::string>) {
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std::vector<char*> actual(rows, nullptr);
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if (rows)
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RequireHdf5(H5Dread(dataset, memory.Get(), H5S_ALL, H5S_ALL,
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H5P_DEFAULT, actual.data()),
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"Solid string column read failed.");
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bool same = true;
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for (std::size_t i = 0; i < rows; ++i) {
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const std::string value = actual[i] ? actual[i] : "";
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same = same && IsValidUtf8(value) && value == values[i];
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}
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Hdf5Handle space{RequireHdf5Id(H5Dget_space(dataset),
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"Solid reclaim space failed."),
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H5Sclose};
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if (rows)
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RequireHdf5(H5Dvlen_reclaim(memory.Get(), space.Get(), H5P_DEFAULT,
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actual.data()),
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"Solid string column release failed.");
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Check(same, "Solid string column identity mismatch.");
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} else {
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std::vector<T> actual(values.size());
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if (rows)
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RequireHdf5(H5Dread(dataset, memory.Get(), H5S_ALL, H5S_ALL,
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H5P_DEFAULT, actual.data()),
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"Solid numeric column read failed.");
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Check(actual == values, "Solid numeric column identity mismatch.");
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if constexpr (std::is_same_v<T, double>)
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for (const auto value : actual)
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Check(std::isfinite(value), "Solid numeric column is nonfinite.");
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}
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},
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column.values);
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}
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} // namespace
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Status SelfCheckSolidFile(const std::filesystem::path& path,
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const SolidPlan& plan,
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herr_t (*reader_close)(hid_t)) {
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try {
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Hdf5ErrorSilencer silence;
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Hdf5Handle file{RequireHdf5Id(H5Fopen(path.string().c_str(), H5F_ACC_RDONLY,
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H5P_DEFAULT),
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"Solid candidate readback open failed."),
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reader_close};
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{
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Hdf5Handle group{
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RequireHdf5Id(H5Gopen2(file.Get(), "/metadata", H5P_DEFAULT),
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"Solid metadata missing."),
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H5Gclose};
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Number<std::uint64_t>(group.Get(), "schema_version", 1, H5T_STD_U64LE,
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H5T_NATIVE_UINT64);
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for (const auto& item : plan.metadata)
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String(group.Get(), item.first, item.second);
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}
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for (const auto& table : plan.tables) {
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auto dataset = Dataset(file.Get(), table.path, {table.rows});
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Hdf5Handle type{RequireHdf5Id(H5Dget_type(dataset.Get()),
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"Solid compound type failed."),
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H5Tclose};
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Check(H5Tget_class(type.Get()) == H5T_COMPOUND &&
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H5Tget_nmembers(type.Get()) ==
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static_cast<int>(table.columns.size()),
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"Solid compound member inventory mismatch.");
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for (std::size_t i = 0; i < table.columns.size(); ++i)
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Column(dataset.Get(), type.Get(), i, table.columns[i], table.rows);
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for (const auto& item : table.strings)
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String(dataset.Get(), item.first, item.second);
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}
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{
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auto dataset = Dataset(file.Get(), "/model/nodal_constraint_mask",
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{plan.mask.size() / 3, 3});
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Hdf5Handle type{
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RequireHdf5Id(H5Dget_type(dataset.Get()), "Solid mask type failed."),
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H5Tclose};
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Check(H5Tequal(type.Get(), H5T_STD_U8LE) > 0,
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"Solid mask dtype mismatch.");
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std::vector<std::uint8_t> mask(plan.mask.size());
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RequireHdf5(H5Dread(dataset.Get(), H5T_NATIVE_UINT8, H5S_ALL, H5S_ALL,
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H5P_DEFAULT, mask.data()),
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"Solid mask read failed.");
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Check(mask == plan.mask, "Solid mask identity mismatch.");
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String(dataset.Get(), "component_names", "UX,UY,UZ");
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}
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for (const auto& data : plan.datasets) {
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auto dataset = Dataset(file.Get(), data.path, data.dimensions);
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Hdf5Handle type{RequireHdf5Id(H5Dget_type(dataset.Get()),
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"Solid result dtype failed."),
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H5Tclose};
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Check(H5Tequal(type.Get(), H5T_IEEE_F64LE) > 0,
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"Solid result dtype mismatch.");
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std::vector<double> values(data.values.size());
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if (!values.empty())
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RequireHdf5(H5Dread(dataset.Get(), H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL,
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H5P_DEFAULT, values.data()),
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"Solid result read failed.");
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Check(values == data.values, "Solid result exact readback mismatch.");
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for (const auto value : values)
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Check(std::isfinite(value), "Solid result is nonfinite.");
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for (const auto& item : data.strings)
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String(dataset.Get(), item.first, item.second);
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for (const auto& item : data.integers)
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Number(dataset.Get(), item.first, item.second, H5T_STD_U64LE,
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H5T_NATIVE_UINT64);
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for (const auto& item : data.doubles)
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Number(dataset.Get(), item.first, item.second, H5T_IEEE_F64LE,
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H5T_NATIVE_DOUBLE);
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}
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RequireHdf5(file.CloseChecked(), "Solid readback close failed.");
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return Status::Ok();
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} catch (const std::exception& error) {
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return OutputFailure("solid-self-check-failure", error.what());
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}
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}
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} // namespace fesa::hdf5_internal
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