240 lines
8.1 KiB
C++
240 lines
8.1 KiB
C++
#include "fesa/math/sparse_matrix.hpp"
|
|
|
|
#include "fesa/fem/dof_manager.hpp"
|
|
|
|
#include <algorithm>
|
|
#include <cmath>
|
|
#include <limits>
|
|
#include <stdexcept>
|
|
#include <string>
|
|
#include <tuple>
|
|
#include <utility>
|
|
|
|
namespace fesa {
|
|
namespace {
|
|
|
|
Status sparseFailure(
|
|
const std::string& code,
|
|
const std::string& identity,
|
|
const std::string& message) {
|
|
return Status::failure(
|
|
FailureCategory::model,
|
|
{{Severity::error,
|
|
code,
|
|
{{}, 0U},
|
|
"SPARSE_MATRIX",
|
|
identity,
|
|
message}});
|
|
}
|
|
|
|
Status validateCsr(
|
|
const std::size_t rows,
|
|
const std::size_t columns,
|
|
const std::vector<std::size_t>& rowOffsets,
|
|
const std::vector<std::size_t>& columnIndices,
|
|
const std::vector<double>* const values) {
|
|
if (rows == (std::numeric_limits<std::size_t>::max)() ||
|
|
rowOffsets.size() != rows + 1U) {
|
|
return sparseFailure(
|
|
"invalid-sparse-shape",
|
|
"row-offset-count",
|
|
"CSR row offsets must contain exactly rows plus one entries.");
|
|
}
|
|
if (rowOffsets.empty() || rowOffsets.front() != 0U ||
|
|
rowOffsets.back() != columnIndices.size()) {
|
|
return sparseFailure(
|
|
"invalid-sparse-pattern",
|
|
"row-offset-range",
|
|
"CSR row offsets must start at zero and end at the column count.");
|
|
}
|
|
if (values != nullptr && values->size() != columnIndices.size()) {
|
|
return sparseFailure(
|
|
"invalid-sparse-shape",
|
|
"value-count",
|
|
"CSR column and value arrays must have equal sizes.");
|
|
}
|
|
|
|
for (std::size_t row = 0U; row < rows; ++row) {
|
|
const std::size_t begin = rowOffsets[row];
|
|
const std::size_t end = rowOffsets[row + 1U];
|
|
if (begin > end || end > columnIndices.size()) {
|
|
return sparseFailure(
|
|
"invalid-sparse-pattern",
|
|
std::to_string(row),
|
|
"CSR row offsets must be nondecreasing and remain in range.");
|
|
}
|
|
for (std::size_t position = begin; position < end; ++position) {
|
|
if (columnIndices[position] >= columns) {
|
|
return sparseFailure(
|
|
"invalid-sparse-index",
|
|
std::to_string(position),
|
|
"CSR column index is outside the matrix dimensions.");
|
|
}
|
|
if (position > begin &&
|
|
columnIndices[position - 1U] >= columnIndices[position]) {
|
|
return sparseFailure(
|
|
"invalid-sparse-pattern",
|
|
std::to_string(row),
|
|
"CSR columns must be sorted and unique within each row.");
|
|
}
|
|
if (values != nullptr && !std::isfinite((*values)[position])) {
|
|
return sparseFailure(
|
|
"nonfinite-sparse-value",
|
|
std::to_string(position),
|
|
"CSR values must be finite.");
|
|
}
|
|
}
|
|
}
|
|
return Status::ok();
|
|
}
|
|
|
|
} // namespace
|
|
|
|
Result<SparseMatrix> SparseMatrix::fromCoo(
|
|
const std::size_t rows,
|
|
const std::size_t columns,
|
|
std::vector<CooContribution> contributions,
|
|
const SparsePattern& expectedPattern) {
|
|
const Status patternStatus = validateCsr(
|
|
rows,
|
|
columns,
|
|
expectedPattern.rowOffsets,
|
|
expectedPattern.columnIndices,
|
|
nullptr);
|
|
if (!patternStatus.isOk()) {
|
|
return Result<SparseMatrix>::failure(patternStatus);
|
|
}
|
|
|
|
for (const auto& contribution : contributions) {
|
|
if (contribution.row >= rows || contribution.column >= columns) {
|
|
return Result<SparseMatrix>::failure(sparseFailure(
|
|
"invalid-sparse-index",
|
|
std::to_string(contribution.row) + ":" +
|
|
std::to_string(contribution.column),
|
|
"COO contribution index is outside the matrix dimensions."));
|
|
}
|
|
if (!std::isfinite(contribution.value)) {
|
|
return Result<SparseMatrix>::failure(sparseFailure(
|
|
"nonfinite-sparse-value",
|
|
std::to_string(contribution.elementOrder) + ":" +
|
|
std::to_string(contribution.localOrder),
|
|
"COO contribution values must be finite."));
|
|
}
|
|
}
|
|
|
|
// The complete tuple fixes duplicate summation order independently of
|
|
// worker completion order. stable_sort also preserves exact tuple ties.
|
|
std::stable_sort(
|
|
contributions.begin(),
|
|
contributions.end(),
|
|
[](const CooContribution& left, const CooContribution& right) {
|
|
return std::tie(
|
|
left.row,
|
|
left.column,
|
|
left.elementOrder,
|
|
left.localOrder) <
|
|
std::tie(
|
|
right.row,
|
|
right.column,
|
|
right.elementOrder,
|
|
right.localOrder);
|
|
});
|
|
|
|
std::vector<double> values(expectedPattern.columnIndices.size(), 0.0);
|
|
for (const auto& contribution : contributions) {
|
|
const std::size_t begin = expectedPattern.rowOffsets[contribution.row];
|
|
const std::size_t end = expectedPattern.rowOffsets[contribution.row + 1U];
|
|
const auto first = expectedPattern.columnIndices.begin() + begin;
|
|
const auto last = expectedPattern.columnIndices.begin() + end;
|
|
const auto found = std::lower_bound(first, last, contribution.column);
|
|
if (found == last || *found != contribution.column) {
|
|
return Result<SparseMatrix>::failure(sparseFailure(
|
|
"sparse-pattern-mismatch",
|
|
std::to_string(contribution.row) + ":" +
|
|
std::to_string(contribution.column),
|
|
"COO contribution is absent from the expected sparse pattern."));
|
|
}
|
|
|
|
const std::size_t position = static_cast<std::size_t>(
|
|
std::distance(expectedPattern.columnIndices.begin(), found));
|
|
values[position] += contribution.value;
|
|
if (!std::isfinite(values[position])) {
|
|
return Result<SparseMatrix>::failure(sparseFailure(
|
|
"nonfinite-sparse-value",
|
|
std::to_string(contribution.row) + ":" +
|
|
std::to_string(contribution.column),
|
|
"Ordered COO duplicate summation produced a nonfinite value."));
|
|
}
|
|
}
|
|
|
|
SparseMatrix matrix{
|
|
rows,
|
|
columns,
|
|
expectedPattern.rowOffsets,
|
|
expectedPattern.columnIndices,
|
|
std::move(values)};
|
|
const Status status = matrix.validate();
|
|
if (!status.isOk()) {
|
|
return Result<SparseMatrix>::failure(status);
|
|
}
|
|
return Result<SparseMatrix>::success(std::move(matrix));
|
|
}
|
|
|
|
std::size_t SparseMatrix::rows() const noexcept {
|
|
return rows_;
|
|
}
|
|
|
|
std::size_t SparseMatrix::columns() const noexcept {
|
|
return columns_;
|
|
}
|
|
|
|
const std::vector<std::size_t>& SparseMatrix::rowOffsets() const noexcept {
|
|
return rowOffsets_;
|
|
}
|
|
|
|
const std::vector<std::size_t>& SparseMatrix::columnIndices() const noexcept {
|
|
return columnIndices_;
|
|
}
|
|
|
|
const std::vector<double>& SparseMatrix::values() const noexcept {
|
|
return values_;
|
|
}
|
|
|
|
Vector SparseMatrix::multiply(const Vector& rhs) const {
|
|
if (columns_ != rhs.size()) {
|
|
throw std::invalid_argument{
|
|
"Sparse matrix-vector multiplication has incompatible dimensions."};
|
|
}
|
|
|
|
Vector result{rows_};
|
|
for (std::size_t row = 0U; row < rows_; ++row) {
|
|
double value = 0.0;
|
|
for (std::size_t position = rowOffsets_[row];
|
|
position < rowOffsets_[row + 1U];
|
|
++position) {
|
|
value += values_[position] * rhs[columnIndices_[position]];
|
|
}
|
|
result[row] = value;
|
|
}
|
|
return result;
|
|
}
|
|
|
|
Status SparseMatrix::validate() const {
|
|
return validateCsr(
|
|
rows_, columns_, rowOffsets_, columnIndices_, &values_);
|
|
}
|
|
|
|
SparseMatrix::SparseMatrix(
|
|
const std::size_t rows,
|
|
const std::size_t columns,
|
|
std::vector<std::size_t> rowOffsets,
|
|
std::vector<std::size_t> columnIndices,
|
|
std::vector<double> values)
|
|
: rows_{rows},
|
|
columns_{columns},
|
|
rowOffsets_{std::move(rowOffsets)},
|
|
columnIndices_{std::move(columnIndices)},
|
|
values_{std::move(values)} {}
|
|
|
|
} // namespace fesa
|